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Useful Chemical Biology Tools
Swiss Institute of Bioinformatics Resource Portal
Suite of chemical biology tools!
ProtParam; TMMHMM; SWISS-MODEL
PDB
Protein Data Bank
PubMed
Scientific search engine
Basic Local Alignment Search Tool (BLAST)
Sequence similarity calculator
Enzyme Function Initiative Tools
Create networks related to proteins
Biological Macromolecule Crystallization Database
Successful conditions/parameters involved in crystallization
Uniprot
Protein database
Bionumbers
Database of useful biological numbers (ions, concentrations, metabolites)
Sequence massager
manipulate genetic code to remove extra stuff (condenses for fasta)
Clustal omega
Sequence alignment tool
Suite of chemical biology tools!
The MEME Suite
WebLogo
Generate logos for aligned sequences
Interpro
Protein sequence analysis & classification
EMBL-EBI
Suite of chemical biology tools!
Pfam
Protein analysis and classification
antiSMASH
Metabolite predictor
PKS/NRPS Analysis Website
PKS/NRPS Analysis
Characterizes rare codons in gene of interest
Rare Codon Caltor
Toxin Exposome Database
Detailed toxin data & comprehensive target information
DNA/RNA analysis
Integrated DNA Technologies
E. coli genotypes on OpenWetWare
List of genes and strains in various lab-common E. coli
VenomZone
Information of venoms and targets from 6 taxa
Suite of chemical biology tools!
Algorithms in Bioinformatics
Very descriptive metabolic pathway maps
KEGG PATHWAY database
SIAS - Sequence Identity and Similarity
Pairwise sequence identity and similarity calculation
Phobius
transmembrane topology and signal peptide predictor
SERp Server
protein mutation predictor for entropy/solubility/crystallization
WormBase
Nematode information
Wormatlas
structure and anatomy of C. elegans
GExplore
C. elegans gene and protein function
Useful Programs
ApE
A plasmid Editor
SnapGene Viewer
DNA sequence analysis
Prism GraphPad
Statistical analysis and graphing
ChemDraw
Chemical Drawing Program
Zotero
Reference Management Software
Mendeley
Reference Management Software
EndNote
Reference Mamagement Software
OriginLab
Statistical analysis and graphing
Mnova
Data manipulation
Benchling
Online shareable lab notebook
Pymol
Protein Visualization Software
Anything not listed here that you think would contribute to this list? Contact us!
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